Package: stIHC
Type: Package
Title: Spatial Transcriptomics Iterative Hierarchical Clustering
Version: 0.1.1
Authors@R: 
    c(person("Catherine", "Higgins", , "catherine.higgins@mu.ie", role = c("aut", "cre")),
    person("Jingyi Jessica", "Li", , "lijy03@fredhutch.org", role = c("aut")),
    person("Michelle", "Carey", , "michelle.carey@ucd.ie", role = c("aut")))
Description: Spatial transcriptomics iterative hierarchical clustering
        ('stIHC'), is a method for identifying spatial gene
        co-expression modules, defined as groups of genes with shared
        spatial expression patterns. The method is applicable across
        spatial transcriptomics technologies with differing spatial
        resolution, and provides a framework for investigating the
        spatial organisation of gene expression in tissues. For further
        details, see Higgins C., Li J.J., Carey M.
        <doi:10.1002/qub2.70011>.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.0.0)
Imports: fdaPDE, stats, cluster, mclust
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, covr
RoxygenNote: 7.3.3
Config/testthat/edition: 3
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-10-22 10:38:42 UTC; root
Author: Catherine Higgins [aut, cre], Jingyi Jessica Li [aut], Michelle
        Carey [aut]
Maintainer: Catherine Higgins <catherine.higgins@mu.ie>
Config/pak/sysreqs: cmake libfreetype6-dev libglu1-mesa-dev make
        texlive libpng-dev libuv1-dev libgl1-mesa-dev zlib1g-dev
Repository: https://catherineh1.r-universe.dev
Date/Publication: 2026-10-21 15:24:52 UTC
RemoteUrl: https://github.com/cran/stIHC
RemoteRef: HEAD
RemoteSha: d0eca465ddb469f2ab7fa09547fd2efeea471ffb